or, depending on you machine configuration:
We will assume the commands' names are
python3 if your machine is configured differently.
Docker or Singularity¶
Singularity is temporarily not supported.
To verify docker is installed, run:
To verify singularity is installed, run:
If using Docker, make sure you can run Docker as a non-root user.
(Optional) MedPerf is better to be installed in a virtual environment. We recommend using Anaconda. Having anaconda installed, create a virtual environment
medperf-envwith the following command:
Then, activate your environment:
Clone the MedPerf repository:
Install MedPerf from source:
Verify the installation: